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GitHub SCIM guide

Native SCIM

How to automate GitHub user provisioning, and what it actually costs

Native SCIM requires Enterprise Cloud (EMU) plan

Summary and recommendation

GitHub supports SCIM (the protocol that lets your identity provider automatically create, update, and remove user accounts), but only on Enterprise Cloud with Enterprise Managed Users (EMU). This is a fundamentally different GitHub account type that requires migration from standard Enterprise organizations—you can't simply enable SCIM on your existing setup. Standard Enterprise organizations get "SCIM" that only sends invitations, not true automated provisioning.

For engineering organizations, this creates a critical security gap. Code repositories are among your most sensitive assets, yet GitHub's SCIM restrictions mean many teams rely on manual access management or invitation-based workflows. When developers leave or change roles, repository access often persists longer than it should. The EMU requirement forces a complex organizational restructure just to get basic automated provisioning, while the $21/user/month Enterprise Cloud pricing makes this expensive for larger development teams.

The strategic alternative

Stitchflow provides SCIM-level provisioning through resilient browser automation for GitHub without requiring EMU migration or Enterprise Cloud licensing. Works with any GitHub plan and any identity provider. Flat pricing under $5K/year, regardless of team size.

Quick SCIM facts

SCIM available?Yes
SCIM tier requiredEnterprise
SSO required first?Yes
SSO available?Yes
SSO protocolSAML 2.0 or OIDC
DocumentationOfficial docs

Supported identity providers

IdPSSOSCIMNotes
OktaOIN app with full provisioning
Microsoft Entra IDGallery app with SCIM
Google WorkspaceJIT onlySAML SSO with just-in-time provisioning
OneLoginSupported

The cost of not automating

Without SCIM (or an alternative like Stitchflow), your IT team manages GitHub accounts manually. Here's what that costs:

Source: Stitchflow customers using GitHub, normalized to 500 employees:
Orphaned accounts (ex-employees with access)3
Unused licenses5
IT hours spent on manual management/year62 hours
Unused license cost/year$1,019
IT labor cost/year$3,724
Cost of compliance misses/year$664
Total annual financial impact$5,407

The GitHub pricing problem

GitHub gates SCIM provisioning behind premium plans, forcing significant cost increases for basic user management.

Plan Structure

PlanPriceSSOSCIM
Team$4/user/month
Enterprise Cloud$21/user/month
Invitations only
Enterprise Cloud (EMU)$21/user/month
Full SCIM

Note: Standard Enterprise Cloud organizations can only send SCIM-triggered invitations, not perform true user provisioning. Full SCIM requires migrating to an Enterprise Managed Users account, which fundamentally changes how GitHub handles identity.

What this means in practice

Using current list prices (Team → Enterprise Cloud EMU):

Team SizeAnnual Upgrade CostWith Advanced Security
50 users+$10,200/year+$28,200/year
100 users+$20,400/year+$56,400/year
200 users+$40,800/year+$112,800/year

Calculation: ($21 - $4) × users × 12 months. Advanced Security adds $30/user/month for active committers.

Additional constraints

EMU migration requirement
Organizations must migrate from standard Enterprise to EMU accounts to get full SCIM, which changes user authentication and can break existing workflows.
IdP lock-in
Cannot mix identity providers - if you configure Okta for SSO/SCIM, you cannot add Entra ID users to the same organization.
30-day evaluation limit
Free trial period may not provide sufficient time to evaluate EMU's impact on existing development workflows.
Rate limiting
SCIM operations are limited to 1,000 users per hour, which can impact large organization migrations.

Summary of challenges

  • GitHub supports SCIM but only at Enterprise tier ($21/user/month (Enterprise))
  • Google Workspace users get JIT provisioning only, not full SCIM
  • Our research shows teams manually provisioning this app spend significant hidden costs annually

What the upgrade actually includes

GitHub doesn't sell SCIM separately. It's only available with Enterprise Cloud's Enterprise Managed Users (EMU) feature, which completely restructures how your organization works:

SCIM automated provisioning (EMU accounts only)
Enterprise Managed Users with centralized identity control
SAML/OIDC single sign-on with IdP-enforced authentication
Advanced security policies and audit logging
IP allowlists and SSH certificate authority
Enterprise-grade support and SLAs
Advanced Security features (additional $30/committer for code scanning)
Secret scanning and push protection capabilities

Here's the catch: EMU isn't just an upgrade—it's a complete migration. You can't convert existing GitHub organizations to EMU. You must create a new EMU organization and migrate all repositories, settings, and workflows. This means weeks of planning, potential downtime, and retraining users on the new authentication flow.

Stitchflow Insight

If you just want automated user provisioning, you're paying $21/user/month for enterprise features plus undergoing a complex migration. We estimate ~60% of EMU features are overkill for teams that simply need to automate GitHub access management.

What IT admins are saying

Community sentiment on GitHub's SCIM implementation is overwhelmingly frustrated. Common complaints:

  • Being locked into Enterprise Managed Users (EMU) for true SCIM functionality
  • Complex migration required from standard Enterprise Cloud to EMU
  • IdP restrictions preventing mixed Okta/Entra ID environments
  • Standard organization SCIM only sending invitations, not actual provisioning

EMU is a completely different beast from regular GitHub Enterprise Cloud. You can't just 'turn on' SCIM - you need a whole new account setup.

GitHub Community Discussion

The fact that you can't mix IdPs is a dealbreaker for our multi-acquisition company. We have both Okta and Azure AD tenants.

Reddit r/sysadmin

Standard org SCIM is basically useless. It just sends email invites instead of actually provisioning users into repositories.

GitHub Enterprise Support Forum

The recurring theme

GitHub's SCIM requires architectural decisions that lock you into specific account types and IdP configurations, making it inaccessible for many real-world enterprise environments.

The decision

Your SituationRecommendation
Need SCIM but on standard GitHub EnterpriseUse Stitchflow: avoid the EMU migration complexity
Want to mix Okta and Entra ID for different teamsUse Stitchflow: GitHub blocks multi-IdP configurations
On Team plan, need automated provisioningUse Stitchflow: avoid the $17/user/month Enterprise upgrade
Already on Enterprise with EMU setupUse native SCIM: you're paying $21/user/month for it
Small dev team with infrequent access changesManual may work: but code security risks are high

The bottom line

GitHub's SCIM requires Enterprise Managed Users at $21/user/month, plus a complex migration from standard Enterprise organizations. For teams that need automated provisioning without the EMU complexity or Enterprise costs, Stitchflow delivers the same automation at a fraction of the price.

Automate GitHub without the tier upgrade

Stitchflow delivers SCIM-level provisioning through resilient browser automation, backed by 24/7 human in the loop for GitHub at <$5K/year, flat, regardless of team size.

Works alongside or instead of native SCIM
Syncs with your existing IdP (Okta, Entra ID, Google Workspace)
Automates onboarding and offboarding
SOC 2 Type II certified
24/7 human-in-the-loop monitoring
Book a Demo

Technical specifications

SCIM Version

2.0

Supported Operations

Create, Update, Deactivate, Groups

Supported Attributes

Not specified

Plan requirement

Enterprise

Prerequisites

SSO must be configured first

Key limitations

  • Full SCIM only on Enterprise Managed Users (EMU) accounts
  • Cannot configure SCIM unless account was created for EMU
  • Cannot mix Okta and Entra ID for SSO/SCIM - returns error
  • Standard org SCIM auto-invites but doesn't fully provision

Configuration for Okta

Integration type

Okta Integration Network (OIN) app with SCIM provisioning

Prerequisite

SSO must be configured before enabling SCIM.

Where to enable

Okta Admin Console → Applications → GitHub → Provisioning

Required credentials

SCIM endpoint URL and bearer token (generated in app admin console).

Configuration steps

Enable Create Users, Update User Attributes, and Deactivate Users.

Provisioning trigger

Okta provisions based on app assignments (users or groups).

OIN app: 'GitHub Enterprise Cloud - Organization'. Supports Create Users, Update User Attributes, Deactivate Users. Import Groups NOT supported. Rate limit: max 1,000 users/hour. Requires PAT with scim:enterprise scope.

Native SCIM is available on Enterprise. Use Stitchflow if you need provisioning without the tier upgrade.

Configuration for Entra ID

Integration type

Microsoft Entra Gallery app with SCIM provisioning

Prerequisite

SSO must be configured before enabling SCIM.

Where to enable

Entra admin center → Enterprise applications → GitHub → Provisioning

Required credentials

Tenant URL (SCIM endpoint) and Secret token (bearer token from app admin console).

Configuration steps

Set Provisioning Mode = Automatic, configure SCIM connection.

Provisioning trigger

Entra provisions based on user/group assignments to the enterprise app.

Sync behavior

Entra provisioning runs on a scheduled cycle (typically every 40 minutes).

Tenant URL format: https://api.github.com/scim/v2/organizations/<Organization_name>. SCIM provisioning sends email invitations to users. Requires Admin permissions and SAML configured. Supports both Enterprise Cloud (org-level) and Enterprise Server.

Native SCIM is available on Enterprise. Use Stitchflow if you need provisioning without the tier upgrade.

Unlock SCIM for
GitHub

GitHub gates automation behind Enterprise Cloud (EMU) plan. Stitchflow delivers the same SCIM outcomes for a flat fee, saving you 425%.

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Last updated: 2026-01-11

* Pricing and features sourced from public documentation.

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