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Atlassian Jira SCIM guide

Native SCIM

How to automate Atlassian Jira user provisioning, and what it actually costs

Native SCIM requires Atlassian Access/Guard subscription plan

Summary and recommendation

Atlassian Jira supports SCIM 2.0 for automated user provisioning, but only with an Atlassian Guard subscription—an additional $3-4/user/month on top of your base Jira plan. For a 100-person team on Standard ($9.05/user/month), adding Guard means a 33-44% cost increase just to unlock basic provisioning automation. Enterprise customers get Guard included, but that's $155/user/year with an 801-user minimum—$124,355 upfront commitment.

The Guard subscription requirement creates a frustrating gap for growing teams. You're paying for Jira licenses but still manually managing user accounts, group assignments, and project access. SSO with JIT provisioning helps with login, but doesn't handle deprovisioning when employees leave or group sync for project permissions. For development teams where access delays impact sprint velocity, manual provisioning becomes a bottleneck.

The strategic alternative

Stitchflow provides managed SCIM automation for Atlassian Jira without requiring the Guard subscription upgrade. Works with any Jira plan and any identity provider. Flat pricing under $5K/year, regardless of team size—saving most organizations thousands compared to the Guard licensing fees.

Quick SCIM facts

SCIM available?Yes
SCIM tier requiredCustom
SSO required first?Yes
SSO available?Yes
SSO protocolSAML 2.0
DocumentationOfficial docs

Supported identity providers

IdPSSOSCIMNotes
OktaOIN app with full provisioning
Microsoft Entra IDGallery app with SCIM
Google WorkspaceFull SCIM support
OneLoginSupported

The cost of not automating

Without SCIM (or an alternative like Stitchflow), your IT team manages Atlassian Jira accounts manually. Here's what that costs:

Source: Stitchflow customers using Atlassian Jira, normalized to 500 employees:
Orphaned accounts (ex-employees with access)16
Unused licenses16
IT hours spent on manual management/year96 hours
Unused license cost/year$2,338
IT labor cost/year$5,784
Cost of compliance misses/year$3,825
Total annual financial impact$11,946

The Atlassian Jira pricing problem

Atlassian Jira gates SCIM provisioning behind premium plans, forcing significant cost increases for basic user management.

Plan Structure (Billed Annually)

PlanPriceSSOSCIM
Standard$9.05/user/mo
Premium$18.30/user/mo
Enterprise$155/user/year (801+ users)
Any plan + Guard StandardBase price + $3-4/user/mo

Note: Enterprise plans include Guard Standard. For teams under 801 users, Guard Standard subscription is required for SCIM access regardless of your Jira plan tier.

What this means in practice

Adding Guard Standard to existing Jira plans:

Team SizeStandard + GuardPremium + GuardAnnual Guard Cost
50 users~$13/user/mo~$22/user/mo+$1,800-2,400/year
100 users~$13/user/mo~$22/user/mo+$3,600-4,800/year
200 users~$13/user/mo~$22/user/mo+$7,200-9,600/year

Calculation: Guard Standard adds approximately 30-40% to your existing Jira costs solely for provisioning capabilities.

Additional constraints

Separate subscription
Guard billing is independent of Jira, creating dual vendor management overhead.
API key expiration
SCIM API keys expire annually, requiring manual renewal to maintain provisioning.
Product limitations
Group sync isn't available for all Atlassian products (notably Bitbucket).
JSM portal gaps
Service Management portal SCIM support is expected Q2 2025, leaving current gaps in coverage.

Summary of challenges

  • Atlassian Jira supports SCIM but only at Custom tier ($155/user/year (min 801 users))
  • Our research shows teams manually provisioning this app spend significant hidden costs annually

What the upgrade actually includes

Atlassian doesn't sell SCIM directly through Jira plans. It requires an Atlassian Guard subscription (formerly Access) that bundles identity features:

SCIM 2.0 automated provisioning
SAML single sign-on (SSO)
Advanced user management across all Atlassian products
Audit logs and compliance reporting
API access controls
Domain verification and security policies
Centralized billing and administration

Guard Standard costs $3-4/user/month on top of your Jira plan. Enterprise customers ($155/user/year minimum) get Guard included, but that's an 801-user minimum commitment.

Stitchflow Insight

If you just want SCIM for a smaller team, you're paying for cross-product administration features you likely don't need. The Guard subscription applies to your entire Atlassian organization, not just Jira users. We estimate ~60% of Guard features are irrelevant for teams that only want Jira user provisioning.

What IT admins are saying

Community sentiment on Atlassian Jira's SCIM implementation centers around the additional subscription requirement. Common complaints:

  • Having to purchase Atlassian Guard/Access subscription just for SCIM provisioning
  • Annual API key expiration creating ongoing maintenance overhead
  • Group sync limitations across different Atlassian products
  • Feeling forced into higher-tier subscriptions for basic identity automation

The extra Access subscription cost feels like a tax on security - we already pay per user, why can't SCIM just be included?

Reddit r/sysadmin

Managing API key expiration every year is just another thing on the todo list that shouldn't be there in 2025.

Atlassian Community Forum

The recurring theme

Organizations feel penalized for wanting automated provisioning, with SCIM treated as an expensive add-on rather than a standard security feature included in base Jira pricing.

The decision

Your SituationRecommendation
On Standard/Premium, need SCIMUse Stitchflow: avoid the $36K-124K/year Access subscription
On Enterprise without Access/GuardUse Stitchflow: add automation without Guard complexity
Already have Atlassian Access/GuardUse native SCIM: you're paying for it
Need Enterprise features + SSO + SCIMEvaluate Enterprise plan: Guard Standard is included
Small dev team, low turnoverManual may work: but developer onboarding delays cost more

The bottom line

Atlassian's SCIM requires an Access/Guard subscription that can cost $36K-124K annually on top of your Jira plan. For development teams that need automated provisioning without the Access overhead, Stitchflow delivers the same automation at a fraction of the cost.

Automate Atlassian Jira without the tier upgrade

Stitchflow delivers SCIM-level provisioning through resilient browser automation, backed by 24/7 human in the loop for Atlassian Jira at <$5K/year, flat, regardless of team size.

Works alongside or instead of native SCIM
Syncs with your existing IdP (Okta, Entra ID, Google Workspace)
Automates onboarding and offboarding
SOC 2 Type II certified
24/7 human-in-the-loop monitoring
Book a Demo

Technical specifications

SCIM Version

2.0

Supported Operations

Create, Update, Deactivate, Groups

Supported Attributes

Not specified

Plan requirement

Custom

Prerequisites

SSO must be configured first

Key limitations

  • Requires Atlassian Access/Guard subscription
  • Group sync not available for Bitbucket
  • API key expiration requires management
  • JSM portal SCIM expected Q2 2025

Configuration for Okta

Integration type

Okta Integration Network (OIN) app with SCIM provisioning

Prerequisite

SSO must be configured before enabling SCIM.

Where to enable

Okta Admin Console → Applications → Atlassian Jira → Provisioning

Required credentials

SCIM endpoint URL and bearer token (generated in app admin console).

Configuration steps

Enable Create Users, Update User Attributes, and Deactivate Users.

Provisioning trigger

Okta provisions based on app assignments (users or groups).

Full SCIM 2.0 support via Atlassian Cloud app in OIN. Supports user create/update/deactivate and group sync. SCIM API keys expire after 1 year (as of Jan 2025).

Native SCIM is available on Custom. Use Stitchflow if you need provisioning without the tier upgrade.

Configuration for Entra ID

Integration type

Microsoft Entra Gallery app with SCIM provisioning

Prerequisite

SSO must be configured before enabling SCIM.

Where to enable

Entra admin center → Enterprise applications → Atlassian Jira → Provisioning

Required credentials

Tenant URL (SCIM endpoint) and Secret token (bearer token from app admin console).

Configuration steps

Set Provisioning Mode = Automatic, configure SCIM connection.

Provisioning trigger

Entra provisions based on user/group assignments to the enterprise app.

Sync behavior

Entra provisioning runs on a scheduled cycle (typically every 40 minutes).

Full SCIM 2.0 provisioning with attribute sync (job title, department). Initial sync takes longer, subsequent syncs every 40 minutes.

Native SCIM is available on Custom. Use Stitchflow if you need provisioning without the tier upgrade.

Unlock SCIM for
Atlassian Jira

Atlassian Jira gates automation behind Atlassian Access/Guard subscription plan. Stitchflow delivers the same SCIM outcomes for a flat fee.

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Last updated: 2026-01-11

* Pricing and features sourced from public documentation.