Summary and recommendation
Paychex Flex, the HR and payroll platform, does not offer native SCIM provisioning on any plan. While Paychex provides SAML 2.0 SSO integration with identity providers, this creates an unusual challenge: as an HR system, Paychex is typically the source of employee data that provisions other applications, not the destination. However, for organizations using Paychex alongside other IdP-managed applications, manual user management becomes necessary. Okta does offer a provisioning connector with Schema Discovery and Attribute Writeback capabilities, but this requires Okta Enterprise and doesn't address integration with other identity providers.
This positioning creates a gap for IT teams managing hybrid identity environments. When Paychex serves as your HR system of record but you need to provision users into Paychex from your primary IdP (perhaps for contractor access or cross-system synchronization), you're forced into manual processes or expensive third-party middleware solutions like RoboMQ Hire2Retire. The lack of standardized SCIM support means each IdP integration requires custom configuration and ongoing maintenance.
The strategic alternative
Stitchflow provides SCIM-level provisioning through resilient browser automation for Paychex that works with any identity provider - Okta, Entra ID, Google Workspace, or OneLogin. We handle the complex integration work regardless of your Paychex plan or IdP setup. Flat pricing under $5K/year with 24/7 human-in-the-loop support.
Quick SCIM facts
| SCIM available? | No |
| SCIM tier required | N/A |
| SSO required first? | No |
| SSO available? | Yes |
| SSO protocol | SAML 2.0 |
| Documentation | Not available |
Supported identity providers
| IdP | SSO | SCIM | Notes |
|---|---|---|---|
| Okta | ✓ | ❌ | Okta Paychex integration supports authentication and provisioning. Also supports PayChex Time and Labor Online. |
| Microsoft Entra ID | ✓ | ❌ | Paychex Flex available in Azure Marketplace for SSO. For full provisioning, use third-party solutions like RoboMQ Hire2Retire. |
| Google Workspace | Via third-party | ❌ | No native support |
| OneLogin | Via third-party | ❌ | No native support |
The cost of not automating
Without SCIM (or an alternative like Stitchflow), your IT team manages Paychex accounts manually. Here's what that costs:
The Paychex pricing problem
Paychex gates SCIM provisioning behind premium plans, forcing significant cost increases for basic user management.
Tier comparison
| Plan | Price | SSO | SCIM |
|---|---|---|---|
| Essentials | $39/mo + $5/employee/mo | ||
| Pro | $47/mo + $3/employee/mo | ||
| Select | Custom pricing | ||
| Enterprise | $95/mo + $3/employee/mo |
Pricing and capabilities
| Plan | Price | SSO | SCIM |
|---|---|---|---|
| Essentials | $39/mo + $5/employee/mo | ||
| Pro | $47/mo + $3/employee/mo | ||
| Select | Custom pricing | ||
| Enterprise | $95/mo + $3/employee/mo |
What this means in practice
Paychex as HR source system: Most organizations use Paychex to provision other applications, not the reverse. Employee data flows from Paychex to your directory services and downstream apps.
Limited automation options
Additional constraints
Summary of challenges
- Paychex does not provide native SCIM at any price tier
- Organizations must rely on third-party tools or manual provisioning
- Our research shows teams manually provisioning this app spend significant hidden costs annually
What Paychex actually offers for identity
SAML SSO (Paychex Flex)
Paychex Flex supports SAML 2.0 single sign-on integration:
| Setting | Details |
|---|---|
| Protocol | SAML 2.0 |
| Supported IdPs | Okta, Entra ID, OneLogin, generic SAML providers |
| Configuration | Standard SAML metadata exchange |
| Plans | Available across all Paychex Flex tiers |
| User requirement | Manual account creation in Paychex required |
Key context: Paychex is an HR/payroll platform that typically serves as the source of employee data for other applications, not the destination.
Okta Provisioning Connector
The Okta Integration Network listing for Paychex includes:
| Feature | Supported? |
|---|---|
| SAML SSO | ✓ Yes |
| Create users | ✓ Yes (via connector) |
| Update users | ✓ Yes (with Schema Discovery) |
| Deactivate users | ✓ Yes |
| Group management | ✓ Yes |
| Attribute writeback | ✓ Yes |
This Okta connector uses proprietary APIs and Schema Discovery, not standard SCIM.
Microsoft Entra Integration
Paychex Flex appears in the Azure Marketplace with SSO support:
| Feature | Details |
|---|---|
| SSO protocol | SAML 2.0 |
| Provisioning | Not available natively |
| Recommended solution | Third-party middleware like RoboMQ Hire2Retire |
Reality check: Most organizations use Paychex as their employee data source and need to provision from Paychex to other applications. The provisioning question is usually reversed - how do you sync employee data from Paychex to your other SaaS tools, not the other way around.
What IT admins are saying
Community sentiment on Paychex's provisioning capabilities reveals frustration with the platform's unique positioning as an HR source system:
- No native SCIM support - Despite being a modern HR platform, Paychex lacks standard SCIM endpoints for automated provisioning
- Reverse provisioning challenges - As the HR system of record, Paychex should be pushing employee data to other apps, not receiving it
- Third-party middleware required - IT teams must deploy additional solutions like RoboMQ Hire2Retire to sync employee data with Active Directory and other systems
- Okta connector limitations - While Okta provides a provisioning connector, it requires complex attribute mapping and doesn't solve the broader data flow challenges
User accounts must exist in Paychex Flex to use single sign-on... SSO does not substitute account creation for Paychex Flex.
For full provisioning automation from Paychex to Active Directory, organizations need third-party solutions like RoboMQ Hire2Retire.
The recurring theme
Paychex creates a provisioning paradox - as your HR system of record, it should be the source pushing employee data everywhere else, but its limited automation capabilities force IT teams to manually manage the flow of employee lifecycle data across their entire tech stack.
The decision
| Your Situation | Recommendation |
|---|---|
| Small HR team (<25 employees) | Manual management acceptable for basic SSO needs |
| Using Paychex as employee source system | Use Stitchflow: reverse sync essential for downstream apps |
| Okta shop with existing Paychex integration | Test Okta's native connector first, fallback to Stitchflow |
| Multi-app environment with Entra ID | Use Stitchflow: no native Entra provisioning available |
| Enterprise with compliance requirements | Use Stitchflow: audit trail essential for HR data flows |
The bottom line
Paychex is typically your employee source system, not a provisioning target. While Okta offers a connector, most organizations need Stitchflow to reliably sync employee data from Paychex to downstream applications with proper audit controls and multi-IdP support.
Automate Paychex without third-party complexity
Stitchflow delivers SCIM-level provisioning through resilient browser automation, backed by 24/7 human in the loop for Paychex at <$5K/year, flat, regardless of team size.
Technical specifications
SCIM Version
Not specifiedSupported Operations
Not specifiedSupported Attributes
Plan requirement
Not specifiedPrerequisites
Not specifiedKey limitations
- No native SCIM documented
- HR source system typically provisions other apps
- SSO available via Paychex Flex
- Third-party middleware needed for full provisioning automation
Documentation not available.
Configuration for Okta
Integration type
Okta Integration Network (OIN) app
Where to enable
Docs
Okta Paychex integration supports authentication and provisioning. Also supports PayChex Time and Labor Online.
Use Stitchflow for automated provisioning.
Configuration for Entra ID
Integration type
Microsoft Entra Gallery app
Where to enable
Paychex Flex available in Azure Marketplace for SSO. For full provisioning, use third-party solutions like RoboMQ Hire2Retire.
Use Stitchflow for automated provisioning.
Unlock SCIM for
Paychex
Paychex doesn't offer SCIM. Get an enterprise-grade SCIM endpoint in your IdP, even without native support.
See how it works


